PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G35520.1
Common NameARF15, F15O4.42
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 598aa    MW: 67963.8 Da    PI: 8.2489
Description auxin response factor 15
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G35520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23131232199
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f kvlt sd +++g +++pkk+a e+     ++++   ++l   d++g++W+++++yr++++r++lt+GW+eF  +++L  gD++vF   + +++el+
  AT1G35520.1 131 FTKVLTASDISANGVFSVPKKHAIEClppldMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFV--RGETGELR 226
                  89****************************9666666779************************************************..449999** PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v+++r+
  AT1G35520.1 227 VGIRRA 232
                  ****97 PP

2Auxin_resp96.34.6e-32257336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha++++++F vvY+Pr+  s+F+v+++k+++a+++k+ vG+Rf m+fe++d serr+ Gt++gvs+++p +W+ S WrsL+
  AT1G35520.1 257 AKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDLSERRYFGTIIGVSNFSP-HWKCSDWRSLE 336
                  6899**************6..9*************************************************.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-37121243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-30129239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-21130231No hitNo description
PROSITE profilePS5086313.719131233IPR003340B3 DNA binding domain
PfamPF023622.3E-20131232IPR003340B3 DNA binding domain
SMARTSM010191.2E-21131233IPR003340B3 DNA binding domain
PfamPF065076.8E-28257335IPR010525Auxin response factor
PfamPF023091.0E-6509552IPR033389AUX/IAA domain
SuperFamilySSF542777.46E-10513595No hitNo description
PROSITE profilePS5174525.347516597IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
METGNVVNAQ PELSGIIDRS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGNIELVEAS  60
TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAKI TLMPDTTVSE NLQVVIPTQN  120
ENQFRPLVNS FTKVLTASDI SANGVFSVPK KHAIECLPPL DMSQPLPAQE LLAIDLHGNQ  180
WSFRHSYRGT PQRHLLTTGW NEFTTSKKLV KGDVIVFVRG ETGELRVGIR RARHQQGNIP  240
SSIVSIDCMR HGVIASAKHA FDNQCMFIVV YKPRSSQFIV SYDKFLDAVN NKFNVGSRFT  300
MRFEGDDLSE RRYFGTIIGV SNFSPHWKCS DWRSLEVQWD EFASFLRPNK VSPWEIEHLM  360
PALNVPRSSF LKNKRLREVN EFGSSSSHLL PPILTQGQEI GQLSVASPMN ISLLYRETTE  420
DAMNPSRLLM SYPVQPMPKR NYNNQMVTQI EENITTKAGT NFRLFGVSLA TPPVIKDPIE  480
QIGSDISKLT EGKKFGQSQT LRSPTKIQSK QFSSTRTCTK VQMQGVTIGR AVDLSVLNGY  540
DQLILELEKL FDLKGQLQTR NQWKIIFTGS DEDEMLVGDD PWPEFCNMVK RIYIQKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldw_B1e-1202735922355Auxin response factor 1
4ldw_A1e-1202735922355Auxin response factor 1
4ldv_A1e-1202735922355Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183997220.0
Genevisible261163_x_at0.0
Expression AtlasAT1G35520-
AtGenExpressAT1G35520-
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G35520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G35520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697960.0AY669796.1 Arabidopsis thaliana clone C105354 ARF22 (At1g34390) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174784.10.0auxin response factor 15
SwissprotQ9LQE30.0ARFO_ARATH; Putative auxin response factor 15
TrEMBLC0SUZ10.0C0SUZ1_ARATH; Auxin response factor (Fragment)
STRINGAT1G35520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Representative plantOGRP5261578
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Hagen G,Guilfoyle T
    Auxin-responsive gene expression: genes, promoters and regulatory factors.
    Plant Mol. Biol., 2002 Jun-Jul. 49(3-4): p. 373-85
    [PMID:12036261]
  3. Remington DL,Vision TJ,Guilfoyle TJ,Reed JW
    Contrasting modes of diversification in the Aux/IAA and ARF gene families.
    Plant Physiol., 2004. 135(3): p. 1738-52
    [PMID:15247399]
  4. Okushima Y, et al.
    Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
    Plant Cell, 2005. 17(2): p. 444-63
    [PMID:15659631]
  5. Axtell MJ,Snyder JA,Bartel DP
    Common functions for diverse small RNAs of land plants.
    Plant Cell, 2007. 19(6): p. 1750-69
    [PMID:17601824]
  6. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  7. Ikeda M,Ohme-Takagi M
    A novel group of transcriptional repressors in Arabidopsis.
    Plant Cell Physiol., 2009. 50(5): p. 970-5
    [PMID:19324928]
  8. Shin R,Jez JM,Basra A,Zhang B,Schachtman DP
    14-3-3 proteins fine-tune plant nutrient metabolism.
    FEBS Lett., 2011. 585(1): p. 143-7
    [PMID:21094157]
  9. Varaud E, et al.
    AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp.
    Plant Cell, 2011. 23(3): p. 973-83
    [PMID:21421811]
  10. Wang J,Yan DW,Yuan TT,Gao X,Lu YT
    A gain-of-function mutation in IAA8 alters Arabidopsis floral organ development by change of jasmonic acid level.
    Plant Mol. Biol., 2013. 82(1-2): p. 71-83
    [PMID:23483289]